straindesign.names

Static strings used in the StrainDesign package

Model and module

MODEL_ID = ‘model_id’

PROTECT = ‘mcs_lin’

SUPPRESS = ‘mcs_bilvl’

SUPPRESS = ‘suppress’

PROTECT = ‘protect’

OPTKNOCK = ‘optknock’

ROBUSTKNOCK = ‘robustknock’

OPTCOUPLE = ‘optcouple’

MODULE_TYPE = ‘module_type’

CONSTRAINTS = ‘constraints’

INNER_OBJECTIVE = ‘inner_objective’

INNER_OPT_SENSE = ‘inner_opt_sense’

OUTER_OBJECTIVE = ‘outer_objective’

OUTER_OPT_SENSE = ‘outer_opt_sense’

PROD_ID = ‘prod_id’

MIN_GCP = ‘min_gcp’

Solvers and status codes

SOLVER = ‘solver’

CPLEX = ‘cplex’

GUROBI = ‘gurobi’

SCIP = ‘scip’

GLPK = ‘glpk’

OPTIMAL = ‘optimal’ # from optlang interface

INFEASIBLE =’infeasible’ # from optlang interface

TIME_LIMIT = ‘time_limit’ # from optlang interface

UNBOUNDED = ‘unbounded’ # from optlang interface

TIME_LIMIT_W_SOL = ‘time_limit_w_sols’

ERROR = ‘error’

Strain design setup

KOCOST = ‘ko_cost’

KICOST = ‘ki_cost’

GKOCOST = ‘gko_cost’

GKICOST = ‘gki_cost’

REGCOST = ‘reg_cost’

MODULES = ‘sd_modules’

SETUP = ‘sd_setup’

MAX_SOLUTIONS = ‘max_solutions’

MAX_COST = ‘max_cost’

T_LIMIT = ‘time_limit’

SOLUTION_APPROACH = ‘solution_approach’

ANY = ‘any’

BEST = ‘best’

POPULATE = ‘populate’

SEED = ‘seed’

Analysis

MAXIMIZE = ‘maximize’

MINIMIZE = ‘minimize’